If you do not have an alignment file in the SAM format you may want to start with Introduction to mapping.
[samopen] SAM header is present: 1 sequences. |
[bam_sort_core] merging from 2 files... |
[mpileup] 1 samples in 1 input files <mpileup> Set max per-file depth to 8000 [bam_pileup_core] the input is not sorted (reads out of order) [afs] 0:0.000 1:0.000 2:0.000 [bam_plp_destroy] memory leak: 1. Continue anyway. |