Wish list for software, resources, scripts, documentation...

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Improvements to launcher_creator.py

• Output a list of the options in the file it is creating and message that -h will give help so that running with no options isn't so confusing.
• Option to request a minimum number of cores -c? for each job (that is converted intelligently to 1way, 2way, etc).
  • Have this work for requesting a certain number of gigabytes of RAM per process (-r)?.
• Aware of queue time limits, etc., so it can give an intelligent error message when you request something incorrectly, like too much time on development.
• Work with the default version of Python. I'm tired of having to module unload python to get Mercurial to work.

Working install of CIRCOS

• Might work with Perl GD module v 1.x.

BioITeam bin/profile_ngs_course.bash

• Should we load more modules by default?
• Pop up a message to remind the user that this file is being loaded when they log in, just in case they forget that we might be changing their environment from time-to-time?

BLAST tutorial

How to create a custom database and BLAST against it. Probably as an extra on Day 1 (nucleotide) or Day 4 (protein).