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  • GMAP and GSNAP
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Version version 2011-11-12 is installed on Fourierseq in /opt on 11/14/11

Publication: http://bioinformatics.oxfordjournals.org/content/26/7/873.full
Web site: http://research-pub.gene.com/gmap/

commands for short-read analysis:

gmap_build
gsnap

commands for cDNA analysis:

gmap
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