MAINTENANCE OUTAGE: The University Wiki Service will undergo maintenance on September 26th, 2017, from 6 pm to 8 pm. During this 2 hour time period may be unavailable. Users are advised to save content locally that may be needed during this time and to otherwise save all edits as unsaved work may be lost. Please contact the UT Service Desk at 512-475-9400 for any questions.
The University Wiki Service has upgraded the Confluence Server software, from version 5.9.14 to 5.10.8. Please refer to the knowledge base article, KB0015891, for a high level summary of upgrade changes. Thank you!
Skip to end of metadata
Go to start of metadata

Current Version 2.5.3. Full documentation from Roche.

Input options

  • Reference sequences
  • Amplicon information
  • Samples
  • Read data

Associations need to be made between all the input information.

Output options

  • Sample/variant information, including frequencies.
  • Ace files
  • Flowgrams - on GUI only
  • Histograms indicating variant positions.

Running GS Amplicon variant analyzer

GUI tool:

  • Can be accessed by typing gsAmplicon

Commandline tool:

  • doAmplicon <files>
  • No labels