Page tree
Skip to end of metadata
Go to start of metadata

Overview


Learning objectives

  1. install QIIme2

Installation

THIS PAGE IS UNDER CONSTRUCTION AND IS NOT COMPLETE

FOLLOWING BLOCK DOES NOT RESULT IN A WORKING QIIMME2
#miniconda install
mkdir -p $WORK/src/miniconda
cd $WORK/src/miniconda
wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh
bash Miniconda3-latest-Linux-x86_64.sh
# hold enter to scroll through user agreement
# enter yes to agree to user agreement
# press enter to agree to installation location $HOME/miniconda3
# press enter to not change your pythonpath variable
logout
ssh back into tacc
cd $WORK/src
wget https://data.qiime2.org/distro/core/qiime2-2020.2-py36-linux-conda.yml
$HOME/miniconda3/bin/conda env create -n qiime2-2020.2 --file qiime2-2020.2-py36-linux-conda.yml



Tutorial:

https://github.com/LangilleLab/microbiome_helper/wiki/Amplicon-SOP-v2-(qiime2-2020.2)

  • No labels