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On another page I discuss the different kinds of cloud storage, but this relates to your file structure as well. With the File Structure described above, I keep the Original Data and text files manuscript files in Box or on a network drive that my collaborators can access. I keep scripts for processing and analyzing data in the GitHub repository. Created Data, Results, and Log Files are all stored in my own personal directories and not shared with my collaborators who are expected to independently replicate results.