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- Introduction
- Getting started at TACC – logging in
- Overview NGS data processing, part 1 (2016_05-NGSintro.pdf)
- Setting up your TACC environment
- Overview NGS data processing, part 2 (2016_05-NGSintro.pdf)
- File systems and transferring files
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- Overview NGS data processing, part parts 2 & 3 (2016_05-NGSintro.pdf)
- Pre-processing raw sequences
- Running batch jobs at TACCPre-processing raw sequences (time permitting)
Day 3: Alignment and BAM file manipulation
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