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We will meet in Room 4.144 of Mezes Hall. We encourage you to use the computers provided in the classroom, but you may also use your personal laptops. |
Day 1: Intro to NGS, Linux and TACC
- Introduction
- Getting started at TACC – logging in
- lecture: NGS overview & technology (2017_05-NGSintro.pdf, part 1)
- Setting up your TACC environment
- File systems and transferring files
Day 2:
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Working with raw sequences
- lecture: the FASTQ format (2017_05-NGSintro.pdf, part 2)
- Working with FASTQ files
- lecture: Sequence QC & preparation (2017_05-NGSintro.pdf, part 3)
- QC & pre-processing
- Running batch jobs at TACC (time permitting)
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