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##Command to pull out ALL gene ids, sorted by adjpvalue store it in a file called ALLRANKED
#Remember we already sorted our results by adjusted pvalue in the deseq2 script before writing it out to a file. So #you just need to pull out the gene ids in the order it already is in. 
sed 's/,/\t/g' deseq2_htseq_C1_vs_C2.csv|cut -f 1|sed 's/"//g'|grep '^FB' > ALLRANKED