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Code Block
titlePull out all the gene ids
#Command to pull out ALL gene ids and store it in a file called ALL

 


SCP THE DATA OVER TO YOUR COMPUTER:

Code Block
titlescp
#ON STAMPEDESTAMPEDE2: copy the path for the ALL and DEG files
pwd
 
#ON LOCAL COMPUTER: from a terminal tab 
scp <username>@stampede<username>@stampede2.tacc.utexas.edu:<pathtofilesonstampede/DEG> .
scp <username>@stampede<username>@stampede2.tacc.utexas.edu:<pathtofilesonstampede/ALL> .

 


RUN GORILLA USING THE UNRANKED METHOD: http://cbl-gorilla.cs.technion.ac.il/ 


Run Gorilla- Rank based enrichment

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Code Block
titlePull out all the gene ids, ranked by pvalue
##Command to pull out ALL gene ids, sorted by pvalue store it in a file called ALLRANKED

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SCP THE DATA OVER TO YOUR COMPUTER:
 Code Block
titlescp
#ON STAMPEDESTAMPEDE2: copy the path for the ALL and DEG files
pwd
 
#ON LOCAL COMPUTER: from a terminal tab 
scp <username>@stampede<username>@stampede2.tacc.utexas.edu:<pathtofilesonstampede/DEG> .
scp <username>@stampede<username>@stampede2.tacc.utexas.edu:<pathtofilesonstampede/ALL> .
...

RUN GORILLA USING THE RANKED METHOD: http://cbl-gorilla.cs.technion.ac.il/