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Day 2: Working with raw sequences
- TACC overview
- lecture: the FASTQ format (2017_05-NGSintro.pdf, part 2)
- Working with FASTQ files
- lecture: Sequence QC & preparation (2017_05-NGSintro.pdf, part 3)
- Sequence quality control with FastQCTrimming sequences
- Running batch jobs at TACC (time permitting)
Day 3: Alignment and BAM file manipulation
- TACC batch jobs
- Trimming sequences
- lecture: Alignment to a reference (2017_05-NGSintro.pdf, part 4)
- Alignment
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