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Exercise: Pull out a subset of the genes using a p_value cutoff of 0.01. Generate a heatmap for just those genes.

Hint
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Solution
Solution
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Code Block
titleOne possible solution
gene_diff_data <- diffData(genes(cuff_data))
 sig_gene_data <- subset(gene_diff_data, (p_value < 0.01))
 head(sig_gene_data)
 sig_geneids <- c(sig_gene_data1$gene_id)
myGenes <- getGenes(cuff_data, sig_geneids)
 csHeatmap(myGenes, cluster = "both")
Hint
If you have trouble sourcing cummeRbund, try this:
 module swap gcc intel
 Reenter R and redo above steps.