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Title:	Mapping with bowtie2 Tutorial
Author:	Daniel Edward Deatherage	May 22, 2015
Last Changed by:	Daniel Edward Deatherage	May 27, 2015
Tiny Link: (useful for email)	https://wikis.utexas.edu/x/tAouBg
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Bioinformatics Team (BioITeam) at the University of Texas (10)     Page: Read Mapping with bowtie2 Tutorial GVA2019     Page: Read Mapping with bowtie2 Tutorial GVA2022     Page: Genome Variant Analysis Course 2015     Page: Read Mapping with bowtie2 Tutorial GVA2023     Page: Read Mapping with bowtie2 Tutorial 2017     Page: Read Mapping with bowtie2 Tutorial GVA2021     Page: Read Mapping with bowtie2 Tutorial GVA2020     Page: Single Nucleotide Variant (SNV) calling Tutorial     Page: Human Trios     Page: Read Mapping with bowtie2 Tutorial

Parent Page     Page: Genome Variant Analysis Course 2015

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Time	Editor
May 27, 2015 10:41	Daniel Edward Deatherage	View Changes
May 27, 2015 05:18	Daniel Edward Deatherage	View Changes
May 25, 2015 08:54	Daniel Edward Deatherage	View Changes
May 22, 2015 13:54	Daniel Edward Deatherage	View Changes
May 22, 2015 13:49	Daniel Edward Deatherage

External Links (11)
    en.wikipedia.org/wiki/List_of_sequence_alignment_software#S…
    http//bowtie-bio.sourceforge.net/bowtie2/
    bp_seqconvert.pl
    www.ncbi.nlm.nih.gov/pubmed/19838166
    www.ncbi.nlm.nih.gov/nuccore/NC_012967.1
    samtools.sourceforge.net/SAM1.pdf
    www.ebi.ac.uk/ena/data/view/SRR030257&display=html
    sourceforge.net/projects/bowtie-bio/files/bowtie2/
    genome.sph.umich.edu/wiki/SAM
    www.ncbi.nlm.nih.gov/sra
    https://wikis.utexas.edu/pages/viewpage.action?pageId=67797…

Bioinformatics Team (BioITeam) at the University of Texas (5)     Page: Mapping tutorial     Page: Linux and Lonestar refresher     Page: Mapping tutorial (bowtie2, bwa) (GVA14)     Page: Genome Variant Analysis Course 2015     Page: Genome Variant Analysis Course 2014