Log in
Skip to sidebar
Skip to main content
Linked Applications
Loading…
Spaces
Hit enter to search
Help
Online Help
Keyboard Shortcuts
Feed Builder
What’s new
Available Gadgets
About Confluence
Log in
Core NGS Tools
Pages
Blog
Page tree
Browse pages
Configure
Space tools
View Page
A
t
tachments (0)
Page History
Page Information
View in Hierarchy
View Source
Export to PDF
Export to Word
Hide Inline Comments
Pages
…
Core NGS Tools Home
Day 5: Post-Alignment Analysis
Analysis using BEDTools
Page Information
Title:
Analysis using BEDTools
Author:
Daechan Park
May 13, 2014
Last Changed by:
Anna M Battenhouse
Jun 09, 2023
Tiny Link:
(useful for email)
https://wikis.utexas.edu/x/8Lz5Aw
Export As:
Word
·
PDF
Incoming Links
Core NGS Tools (3)
Home page:
Core NGS Tools Home
Page:
Core NGS Resources
Page:
Day 5: Post-Alignment Analysis
Hierarchy
Parent Page
Page:
Day 5: Post-Alignment Analysis
Labels
There are no labels assigned to this page.
Recent Changes
Time
Editor
Jun 09, 2023 16:32
Anna M Battenhouse
View Changes
Jun 08, 2023 23:10
Anna M Battenhouse
View Changes
Jun 08, 2023 21:44
Anna M Battenhouse
View Changes
Jun 08, 2023 08:51
Anna M Battenhouse
View Changes
Jun 08, 2023 00:00
Anna M Battenhouse
View Page History
Outgoing Links
External Links (22)
https://useast.ensembl.org/info/website/upload/gff3.html
bedtools.readthedocs.io/en/latest/content/tools/getfasta.ht…
bedtools.readthedocs.io/en/latest/content/tools/bamtofastq.…
bedtools.readthedocs.io/en/latest/content/tools/merge.html
https://software.broadinstitute.org/software/igv/download
genome.ucsc.edu/FAQ/FAQformat.html
bedtools.readthedocs.io/en/latest/content/tools/multicov.ht…
bedtools.readthedocs.io/en/latest/content/tools/bamtobed.ht…
https://genome.ucsc.edu/FAQ/FAQformat.html#format6.1
bedtools.readthedocs.io/en/latest/content/bedtools-suite.ht…
https://genome.ucsc.edu/goldenpath/help/bigWig.html
bedtools.readthedocs.io/en/latest/content/tools/subtract.ht…
https://genome.ucsc.edu/FAQ/FAQformat.html#format4
https://genome.ucsc.edu/
https://genome.ucsc.edu/FAQ/FAQformat.html#format1
https://bedtools.readthedocs.io/en/latest/content/tools/gen…
bedtools.readthedocs.io/en/latest/content/tools/coverage.ht…
https://genome.ucsc.edu/goldenpath/help/bedgraph.html
https://www.gencodegenes.org/
https://bedtools.readthedocs.io/en/latest/content/tools/cov…
bedtools.readthedocs.io/en/latest/content/tools/intersect.h…
bedtools.readthedocs.io/en/stable/content/tools/closest.htm…
Core NGS Tools (1)
Page:
Linux fundamentals
wikis.utexas.edu/display/CbbShortBashScript (1)
Page:
Tips and tricks
Overview
Content Tools
{"serverDuration": 92, "requestCorrelationId": "0b57232e8a2bb7f7"}