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Title:	2020 Pre-processing raw sequences
Author:	Anna M Battenhouse	Jun 01, 2021
Last Changed by:	Anna M Battenhouse	Jun 01, 2021
Tiny Link: (useful for email)	https://wikis.utexas.edu/x/XYIaEg
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Core NGS Tools (1)     Page: 2020 Core NGS Tools Home

Parent Page     Page: 2020 Day 3: Working with raw sequences

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Time	Editor
Jun 01, 2021 06:29	Anna M Battenhouse

External Links (11)
    www.bioinformatics.babraham.ac.uk/projects/fastqc/Help/3%20…
    https://web.corral.tacc.utexas.edu/BioITeam/CoreNGS/SRA/SRR…
    web.corral.tacc.utexas.edu/BioITeam/yeast_stuff/Sample_Yeas…
    https://web.corral.tacc.utexas.edu/BioITeam/CoreNGS/reports…
    www.bioinformatics.babraham.ac.uk/projects/fastqc/bad_seque…
    hannonlab.cshl.edu/fastx_toolkit/
    www.bioinformatics.babraham.ac.uk/projects/fastqc/good_sequ…
    https://web.corral.tacc.utexas.edu/BioITeam/CoreNGS/reports…
    https://cutadapt.readthedocs.org/en/stable/
    https://web.corral.tacc.utexas.edu/BioinformaticsResource/C…
    web.corral.tacc.utexas.edu/BioITeam/yeast_stuff/yeast_chip_…

Bioinformatics Team (BioITeam) at the University of Texas (1)     Page: Using MultiQC

Core NGS Tools (1)     Page: 2020 Linux fundamentals

Genomic Sequencing and Analysis Facility User Support Wiki (1)     Page: Illumina - all flavors (USE with Caution, this is outdated but can be useful for a basic understanding of the adapters, the GSAF primarily only uses UDI's for all projects)