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Title:	Mapping tutorial (bowtie2, bwa) (GVA14)
Author:	Jeffrey E Barrick	May 16, 2014
Last Changed by:	Jeffrey E Barrick	May 19, 2014
Tiny Link: (useful for email)	https://wikis.utexas.edu/x/54EKB
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Bioinformatics Team (BioITeam) at the University of Texas (11)     Page: Integrative Genomics Viewer (IGV) tutorial (GVA14)     Page: Read Mapping with bowtie2 Tutorial GVA2021     Page: Mapping with bowtie2 Tutorial     Page: Genome Variant Analysis Course 2014     Page: Read Mapping with bowtie2 Tutorial GVA2023     Page: Read Mapping with bowtie2 Tutorial GVA2020     Page: Read Mapping with bowtie2 Tutorial GVA2022     Page: Read Mapping with bowtie2 Tutorial     Page: Read Mapping with bowtie2 Tutorial GVA2019     Page: Read Mapping with bowtie2 Tutorial 2017     Page: IGV Tutorial

Parent Page     Page: Genome Variant Analysis Course 2014

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Time	Editor
May 19, 2014 11:00	Jeffrey E Barrick	View Changes
Migrated to Confluence 5.3
May 19, 2014 11:00	Jeffrey E Barrick	View Changes
May 18, 2014 06:33	Jeffrey E Barrick	View Changes
May 18, 2014 06:25	Jeffrey E Barrick	View Changes
May 18, 2014 06:21	Jeffrey E Barrick

External Links (15)
    www.ncbi.nlm.nih.gov/nuccore/NC_012967.1
    maq.sourceforge.net/
    bio-bwa.sourceforge.net/
    sourceforge.net/projects/bio-bwa/files/
    www.ncbi.nlm.nih.gov/pubmed/19838166
    en.wikipedia.org/wiki/GenBank
    genome.sph.umich.edu/wiki/SAM
    en.wikipedia.org/wiki/List_of_sequence_alignment_software#S…
    www.ncbi.nlm.nih.gov/sra
    www.ebi.ac.uk/ena/data/view/SRR030257&display=html
    samtools.sourceforge.net/SAM1.pdf
    bio-bwa.sourceforge.net/bwa.shtml
    http//bowtie-bio.sourceforge.net/bowtie2/
    en.wikipedia.org/wiki/FASTQ_format
    sourceforge.net/projects/bowtie-bio/files/bowtie2/

Bioinformatics Team (BioITeam) at the University of Texas (4)     Page: SNV calling tutorial (GVA14)     Page: Mapping tutorial     Page: Genome Variant Analysis Course 2014     Page: Integrative Genomics Viewer (IGV) tutorial (GVA14)