UCSC Genome Browser
The UCSC Genome Browser is an invaluable resource both for obtaining public sequencing data and for visualizing it.
- http://genome.ucsc.edu/ ? Genome Browser ? submit
- navigaion
- type GAPDH in gene box ? jump
- note zoom out/zoom in buttons; click on position or click/drag
- track detail
- click "Multiz Alignments" to expand track detail
- click on one of the SNP to expand track detail
- then click on the snp name to see details
- selecting tracks
- under "Regulation" section, change Regulation track from "show" to "hide" ? refresh
- right click "Multiz Alignments" ? hide
- under "Phenotype and Disease Association" change GWAS Catalog from "hide" to "squish" ? refresh
- type PRNP in gene box ? jump.
- click on "NHGRI Catalog..." track description to expand detail
- note correspondence between SNPs (SNP 132) and disease SNPs (GWAS)
- click on one of the disease SNPs for detail
