Old Etherpad link:  https://etherpad.mozilla.org/g2NxIEAFWL

Misc Day 1: Linux/TACC Introduction

• Linux fundamentals
• Getting started at TACC
  • Editing files (old)
  • Stampede profile (old)
  • Piping and redirection (old)

Misc Day 2: Raw Sequencing data manipulation

• Pre-processing FASTQ sequences (old)
• Example of NGS analyses
• The FASTA sequencing data format
• Batch manipulation of FASTQ files

Misc Day 4: Odds & Ends

• Obtaining public datasets from NCBI (needs update)
• Visualize mapped data at UCSC genome browser (needs update)
• Shell scripting (needs update)