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changes.mady.by.user Anna M Battenhouse

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changes.mady.by.user Eric J Rostetter

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  • JupyterHub Server
    • Clicking "Logout" in JupyterHub server does not work – it displays a "404 page not found" error.
  • R (and/or RStudio Server)
    • A few R packages may not be working correctly on some upgraded machines. These may include:
      • Seurat
      • Signac
      • ChIPseeker
  • Command-line programs
    The following programs
      may not be working currently, but we are working to correct them ASAP.
    • bcl2fastq
    • gossamer
      • glimmer2
    • On the EDU pod, the 3rd party programs used by Josh Beckham's FRI stream (e.g. Gold) are not yet working.
  • Storage server access
    • The rssh program that allows direct access to the shared storage server via SSH (e.g. scp, rsync, sftp) is not available in Ubuntu 20.04. We are actively working to implement a suitable replacement. Meanwhile, files can be transferred to/from the storage server through any of a POD's compute server via scp, rsync, sftp.

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