Title: Pre-processing raw sequences  
Author: Anna M Battenhouse May 11, 2014
Last Changed by: Anna M Battenhouse Jun 07, 2023
Tiny Link: (useful for email) https://wikis.utexas.edu/x/urb5Aw
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Core NGS Tools (1)
    Home page: Core NGS Tools Home
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Parent Page
    Page: Day 3: Working with raw sequences
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Time Editor  
Jun 07, 2023 12:23 Anna M Battenhouse View Changes
Jun 07, 2023 12:07 Anna M Battenhouse View Changes
Jun 06, 2023 20:55 Anna M Battenhouse View Changes
Jun 06, 2023 20:11 Anna M Battenhouse View Changes
Jun 06, 2023 19:34 Anna M Battenhouse  
Outgoing Links
External Links (10)
    https://web.corral.tacc.utexas.edu/BioinformaticsResource/C…
    https://web.corral.tacc.utexas.edu/BioinformaticsResource/C…
    https://cutadapt.readthedocs.org/en/stable/
    https://web.corral.tacc.utexas.edu/BioinformaticsResource/C…
    https://alvinalexander.com/programming/printf-format-cheat-…
    www.bioinformatics.babraham.ac.uk/projects/fastqc/bad_seque…
    hannonlab.cshl.edu/fastx_toolkit/
    https://web.corral.tacc.utexas.edu/BioinformaticsResource/C…
    www.bioinformatics.babraham.ac.uk/projects/fastqc/good_sequ…
    www.bioinformatics.babraham.ac.uk/projects/fastqc/Help/3%20…
Bioinformatics Team (BioITeam) at the University of Texas (1)     Page: Using MultiQC
Genomic Sequencing and Analysis Facility User Support Wiki (1)     Page: Illumina - all flavors (USE with Caution, this is outdated but can be useful for a basic understanding of the adapters, the GSAF primarily only uses UDI's for all projects)
Core NGS Tools (1)     Page: Linux fundamentals