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Core NGS Tools Home
Resources
Linux fundamentals
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Title:
Linux fundamentals
Author:
Anna M Battenhouse
May 13, 2014
Last Changed by:
Anna M Battenhouse
Jun 09, 2023
Tiny Link:
(useful for email)
https://wikis.utexas.edu/x/k7v5Aw
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Core NGS Tools (12)
Page:
Core NGS Resources
Page:
Getting started at TACC
Page:
Old stuff
Page:
Running batch jobs at TACC
Page:
Pre-processing raw sequences
Page:
Working with FASTQ files
Page:
Analysis using BEDTools
Page:
Copy of good Alignment workflow
Page:
File systems and transferring files
Home page:
Core NGS Tools Home
Page:
More Alignment exercises
Page:
The Basic Alignment Workflow
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Recent Changes
Time
Editor
Jun 09, 2023 08:51
Anna M Battenhouse
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Jun 06, 2023 21:22
Anna M Battenhouse
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Jun 06, 2023 19:16
Anna M Battenhouse
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Jun 06, 2023 19:10
Anna M Battenhouse
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Jun 06, 2023 19:09
Anna M Battenhouse
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Outgoing Links
External Links (22)
www.chiark.greenend.org.uk/~sgtatham/putty/download.html
https://notepad-plus-plus.org/downloads/
www.atmos.albany.edu/daes/atmclasses/atm350/vi_cheat_sheet.…
https://docs.microsoft.com/en-us/windows/wsl/install-win10
mywiki.wooledge.org/BashFAQ
www.hypexr.org/linux_scp_help.php
https://wikis.utexas.edu/display/CbrsIntermUnix
perldoc.perl.org/perlretut.html
https://www.regular-expressions.info/
https://unix.stackexchange.com/questions/209123/understandi…
https://www.asciitable.com/
mywiki.wooledge.org/BashGuide
regexone.com
https://wikis.utexas.edu/display/CbrsIntroUnix
ryanstutorials.net/bash-scripting-tutorial/
https://www.gnu.org/software/bash/manual/html_node/Bash-Con…
www.activestate.com/komodo-edit/downloads
ryanstutorials.net/regular-expressions-tutorial/
www.grymoire.com/Unix/Awk.html
mywiki.wooledge.org/BashPitfalls
https://www.gnu.org/software/emacs/refcards/pdf/refcard.pdf
https://winscp.net/eng/index.php
Core NGS Tools (2)
Page:
Decimal and Hexadecimal
Page:
Linux fundamentals
Bioinformatics Team (BioITeam) at the University of Texas (1)
Page:
SSC Intro to NGS Bioinformatics Course
Overview
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