Title: Genome Variant Analysis Course 2020  
Author: Daniel Edward Deatherage Jun 14, 2020
Last Changed by: Daniel Edward Deatherage Jul 12, 2020
Tiny Link: (useful for email) https://wikis.utexas.edu/x/lcoHE
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Incoming Links
Bioinformatics Team (BioITeam) at the University of Texas (30)
    Page: Read Mapping with bowtie2 Tutorial GVA2020
    Page: IGV Tutorial -- GVA2020
    Page: Trimmomatic - GVA2020
    Page: Exome Capture Metrics GVA2020
    Page: Addressing launcher_creator.py issues
    Page: Genome Assembly (SPAdes) -- GVA2020
    Page: Linux and Lonestar 5 Setup -- GVA2020
    Page: Novel DNA Identification -- GVA2020
    Page: Bedtools tutorial -- GVA2020
    Page: Molecular Index Error correction GVA2020
    Page: Evaluating and processing raw sequencing data GVA2020
    Page: Accessing remote computers via ssh on MacOs
    Page: Human Trios -- GVA2020
    Page: Launching an iDev session
    Page: Annovar Annotations -- GVA2020
    Page: Copying files from TACC to your computer.
    Page: Advanced breseq GVA2020
    Page: Accessing remote computers via ssh on Windows10
    Page: SSCS vs Trimmed Read Variant calls GVA2020
    Page: Read Mapping with bowtie2 Tutorial GVA2021
    Page: MultiQC - fastQC summary tool -- GVA2020
    Page: Lonestar5 Breseq Tutorial GVA2020
    Page: Genome Analysis Toolkit (GATK) . -- GVA2020
    Page: Single Nucleotide Variant (SNV) calling Tutorial GVA2020
    Page: Breseq - installation GVA2020
    Page: Advanced bowtie2 -- GVA202
    Page: GVA2020 - Class Review
    Page: Structural Variant (SV) calling with SVdetect 2020
    Page: Annovar Annotations -- GVA2021
    Page: Breseq with multiple refs.
Hierarchy
Parent Page
    Page: Bioinformatics Courses and Content
Children (29)
    Page: Accessing remote computers via ssh on MacOs
    Page: Accessing remote computers via ssh on Windows10
    Page: Addressing launcher_creator.py issues
    Page: Advanced bowtie2 -- GVA202
    Page: Advanced breseq GVA2020
    Page: Annovar Annotations -- GVA2020
    Page: Bedtools tutorial -- GVA2020
    Page: Breseq - installation GVA2020
    Page: Breseq with multiple refs.
    Page: Copying files from TACC to your computer.
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Recent Changes
Time Editor  
Jul 12, 2020 12:11 Daniel Edward Deatherage View Changes
Jul 12, 2020 11:22 Daniel Edward Deatherage View Changes
Jun 26, 2020 03:21 Daniel Edward Deatherage View Changes
Jun 26, 2020 02:46 Daniel Edward Deatherage View Changes
Jun 26, 2020 02:06 Daniel Edward Deatherage  
Outgoing Links
External Links (4)
    https://barricklab.org/twiki/bin/view/Lab
    https://www.tacc.utexas.edu/
    barricklab.org/
    https://wikis.utexas.edu/display/GSAF/About+Us#Scott
Bioinformatics Team (BioITeam) at the University of Texas (27)     Page: Evaluating and processing raw sequencing data GVA2020
    Page: Genome Assembly (SPAdes) -- GVA2020
    Page: Single Nucleotide Variant (SNV) calling Tutorial GVA2020
    Page: IGV Tutorial -- GVA2020
    Page: Breseq - installation GVA2020
    Page: Addressing launcher_creator.py issues
    Page: Accessing remote computers via ssh on MacOs
    Page: Advanced breseq GVA2020
    Page: Human Trios -- GVA2020
    Page: Genome Variant Analysis Course 2020
    Page: Genome Analysis Toolkit (GATK) . -- GVA2020
    Page: Linux and Lonestar 5 Setup -- GVA2020
    Page: MultiQC - fastQC summary tool -- GVA2020
    Page: GVA2020 - Class Review
    Page: Exome Capture Metrics GVA2020
    Page: Breseq with multiple refs.
    Page: Trimmomatic - GVA2020
    Page: Lonestar5 Breseq Tutorial GVA2020
    Page: Bedtools tutorial -- GVA2020
    Page: Accessing remote computers via ssh on Windows10
    Page: Novel DNA Identification -- GVA2020
    Page: Annovar Annotations -- GVA2020
    Page: SSCS vs Trimmed Read Variant calls GVA2020
    Page: Structural Variant (SV) calling with SVdetect 2020
    Page: Read Mapping with bowtie2 Tutorial GVA2020
    Page: Molecular Index Error correction GVA2020
    Page: Advanced bowtie2 -- GVA202